Useful notes when running GEM
consult@nersc.gov
slogin -X s...@edison.nersc.gov
slogin -Y s...@edison.nersc.gov
ctr alt T for a terminal in Ubuntu
/scratch1/scratchdirs/sparker/hybrid
qstat -a | grep sparker
more run.out:
use bash shell
modify .bashrc.ext for aliases
alias qst='qstat -u sparker'
alias scr='cd /scratch1/scratchdirs/sparker'
module load dfftpac
module load idl
scp s...@edison.nersc.gov:/scratch1/scratchdirs/sparker/hybrid/run1.0/run.out .
subroutine spec(n) writes out the list off numbers to the screen
------------------ 5-14-2015 - Running matlab with Weigang's scripts ----------------
home/data
.out files
home/bin
drun - executable
home/Documents/MATLAB/mcode
all of Weigang's scripts
plinear
drun - don't need to run drun it is called by plinear
cat run.dat run.dat.1 > run.out
secplot('phixy')
secplot('phixy',40)
dt=2
nplot=100
secmovie('phixy',dt*nplot)
run plinear first
set dt=20 (script dt = xnplot*dt)
gmstart=70 (analysis is done for the last 30 percent)
cgamma
comega
-------------------------------------------------------------------------------------
Using IDL to measure frequency:
idl plot; gs indica.ps
uses the file indicator (FFT of point-mode data) to measure frequency
Running hybrid code n=40,000, nmx=100,000 - need to run for many timesteps!
smaller run with 4M particles, 64x32x64 took 364 s for 400 ts.
slogin -X s...@edison.nersc.gov
slogin -Y s...@edison.nersc.gov
ctr alt T for a terminal in Ubuntu
/scratch1/scratchdirs/sparker/hybrid
qstat -a | grep sparker
more run.out:
use bash shell
modify .bashrc.ext for aliases
alias qst='qstat -u sparker'
alias scr='cd /scratch1/scratchdirs/sparker'
module load dfftpac
module load idl
scp s...@edison.nersc.gov:/scratch1/scratchdirs/sparker/hybrid/run1.0/run.out .
subroutine spec(n) writes out the list off numbers to the screen
------------------ 5-14-2015 - Running matlab with Weigang's scripts ----------------
home/data
.out files
home/bin
drun - executable
home/Documents/MATLAB/mcode
all of Weigang's scripts
plinear
drun - don't need to run drun it is called by plinear
cat run.dat run.dat.1 > run.out
secplot('phixy')
secplot('phixy',40)
dt=2
nplot=100
secmovie('phixy',dt*nplot)
run plinear first
set dt=20 (script dt = xnplot*dt)
gmstart=70 (analysis is done for the last 30 percent)
cgamma
comega
-------------------------------------------------------------------------------------
Using IDL to measure frequency:
idl plot; gs indica.ps
uses the file indicator (FFT of point-mode data) to measure frequency
Running hybrid code n=40,000, nmx=100,000 - need to run for many timesteps!
smaller run with 4M particles, 64x32x64 took 364 s for 400 ts.